rs578940159 SNP Detail

Summary

• ID
  rs578940159
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127869782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AGAAGGAGAA GGAGAAGGAG
  A
  AGGAGGAGGA GGAGGAGGAG AAGAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920683144	MGP_WTSI_10_128033913	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578940159					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920683144	MGP_WTSI_10_128033913	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127869782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	1355 bp proximal
Gm66417	predicted gene, 66417	within coordinates
Gm66418	predicted gene, 66418	within coordinates
Naca	nascent polypeptide-associated complex alpha polypeptide	1662 bp upstream
Rr224438	regulatory region 224438	818 bp proximal
Rr385474	regulatory region 385474	900 bp upstream
Tssr96285	transcription start site region 96285	643 bp downstream
Tssr96286	transcription start site region 96286	561 bp downstream
Tssr96287	transcription start site region 96287	305 bp downstream
Tssr96288	transcription start site region 96288	238 bp downstream
Tssr96289	transcription start site region 96289	219 bp downstream
Tssr96290	transcription start site region 96290	1417 bp upstream
Tssr96291	transcription start site region 96291	1426 bp upstream
Tssr96292	transcription start site region 96292	1450 bp upstream
Tssr96293	transcription start site region 96293	1567 bp upstream
Tssr96294	transcription start site region 96294	1674 bp upstream
Tssr96295	transcription start site region 96295	1691 bp upstream
Tssr96296	transcription start site region 96296	1712 bp upstream
Tssr96297	transcription start site region 96297	1724 bp upstream