rs578942341 SNP Detail

Summary

• ID
  rs578942341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81014369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA CACACTTGGA GATTTAGCGC
  Y
  TGGGCATCCA TACCGTGTAC CTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss920498550	MGP_WTSI_10_81178535	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs578942341					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920498550	MGP_WTSI_10_81178535	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81014369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	359 bp distal
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	1466 bp upstream
Rr402079	regulatory region 402079	1855 bp downstream
Rr435542	regulatory region 435542	1894 bp distal
Rr435543	regulatory region 435543	1477 bp distal
Rr435544	regulatory region 435544	976 bp distal
Rr435545	regulatory region 435545	1140 bp proximal
Rr435546	regulatory region 435546	1632 bp proximal
Snord37	small nucleolar RNA, C/D box 37	426 bp upstream
Tssr94695	transcription start site region 94695	1887 bp downstream
Tssr94696	transcription start site region 94696	798 bp downstream
Tssr94697	transcription start site region 94697	698 bp downstream
Tssr94698	transcription start site region 94698	447 bp downstream
Tssr94699	transcription start site region 94699	615 bp upstream
Tssr94700	transcription start site region 94700	799 bp upstream
Tssr94701	transcription start site region 94701	859 bp upstream
Tssr94702	transcription start site region 94702	1036 bp upstream
Tssr94703	transcription start site region 94703	1099 bp upstream
Tssr94704	transcription start site region 94704	1118 bp upstream
Tssr94705	transcription start site region 94705	1146 bp upstream
Tssr94706	transcription start site region 94706	1338 bp upstream
Tssr94707	transcription start site region 94707	1388 bp upstream
Tssr94708	transcription start site region 94708	1453 bp upstream
Tssr94709	transcription start site region 94709	1707 bp upstream
Tssr98570	transcription start site region 98570	843 bp downstream
Tssr98571	transcription start site region 98571	1211 bp downstream