rs578968650 SNP Detail

Summary

• ID
  rs578968650
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15079925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATG TTATTCACCT GACAACCTGT
  A
  GTGGGCTGCA GATTAAAGCA GAGTT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	NOD/ShiLtJ	PWK/PhJ	RF/J	SPRET/EiJ	WSB/EiJ
ss917236554	MGP_WTSI_5_15029911	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	NOD/ShiLtJ	PWK/PhJ	RF/J	SPRET/EiJ	WSB/EiJ
rs578968650					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917236554	MGP_WTSI_5_15029911	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15079925 () rs orientation: forward

Symbol	Name	Function Class
Gm17019	predicted gene 17019	within coordinates
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	325 bp distal
Rr121523	regulatory region 121523	1590 bp distal
Rr121525	regulatory region 121525	374 bp distal
Rr121527	regulatory region 121527	191 bp proximal
Rr121528	regulatory region 121528	666 bp proximal