rs578969526 SNP Detail

Summary

• ID
  rs578969526
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140429626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGGC GGCAGCAGCG GCGACGAGGA
  C
  GGCCCGGAGC TGGACGGGGC CCCCG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss917113019	MGP_WTSI_4_140702315	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs578969526					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917113019	MGP_WTSI_4_140702315	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140429626 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	1045 bp upstream
Gm69529	predicted gene, 69529	1845 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	591 bp downstream
Rr603518	regulatory region 603518	1764 bp distal
Rr603519	regulatory region 603519	1056 bp distal
Rr603520	regulatory region 603520	832 bp distal
Rr603521	regulatory region 603521	884 bp distal
Tssr39974	transcription start site region 39974	1969 bp downstream
Tssr39975	transcription start site region 39975	1830 bp downstream
Tssr39976	transcription start site region 39976	1786 bp downstream
Tssr39977	transcription start site region 39977	1702 bp downstream
Tssr39978	transcription start site region 39978	878 bp downstream
Tssr39979	transcription start site region 39979	852 bp downstream
Tssr39980	transcription start site region 39980	806 bp downstream
Tssr39981	transcription start site region 39981	794 bp downstream
Tssr39982	transcription start site region 39982	767 bp downstream
Tssr39983	transcription start site region 39983	696 bp downstream
Tssr39984	transcription start site region 39984	476 bp downstream
Tssr39985	transcription start site region 39985	393 bp downstream
Tssr39986	transcription start site region 39986	353 bp downstream
Tssr39987	transcription start site region 39987	165 bp downstream
Tssr39988	transcription start site region 39988	117 bp downstream
Tssr39989	transcription start site region 39989	77 bp downstream
Tssr44273	transcription start site region 44273	1226 bp upstream
Tssr44274	transcription start site region 44274	83 bp downstream
Tssr44275	transcription start site region 44275	1351 bp downstream