rs579035011 SNP Detail

Summary

• ID
  rs579035011
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:51341700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG AGAGGAAGAG AAGAAGAGAG
  G
  AGAGGAAGAG AGGAGAGGAA AGGAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	SM/J	SPRET/EiJ
ss922300644	MGP_WTSI_14_51104243	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	SM/J	SPRET/EiJ
rs579035011					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922300644	MGP_WTSI_14_51104243	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:51341700 () rs orientation: forward

Symbol	Name	Function Class
Rnase4	ribonuclease, RNase A family 4	within coordinates
Rr288976	regulatory region 288976	300 bp distal
Rr288977	regulatory region 288977	701 bp proximal
Rr295428	regulatory region 295428	1926 bp proximal
Rr299307	regulatory region 299307	509 bp distal
Tssr125402	transcription start site region 125402	631 bp upstream
Tssr125403	transcription start site region 125403	707 bp upstream
Tssr125404	transcription start site region 125404	920 bp upstream
Tssr125405	transcription start site region 125405	1085 bp upstream
Tssr125406	transcription start site region 125406	1169 bp upstream
Tssr128409	transcription start site region 128409	1133 bp downstream
Tssr128410	transcription start site region 128410	1170 bp downstream