rs579037180 SNP Detail

Summary

• ID
  rs579037180
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184467088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA GGAGAGGAGA GGAGAGGAGA
  G
  GAAAAGAAAA GAAAAGAAAA GAAAA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	NZB/BlNJ	NZO/HlLtJ	SPRET/EiJ	SWR/J
ss915181834	MGP_WTSI_1_184734891	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	FVB/NJ	NZB/BlNJ	NZO/HlLtJ	SPRET/EiJ	SWR/J
rs579037180					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915181834	MGP_WTSI_1_184734891	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184467088 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1158	CpG island 1158	1652 bp distal
Cpgi1159	CpG island 1159	145 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425267	regulatory region 425267	724 bp distal
Rr425268	regulatory region 425268	within coordinates
Tssr10590	transcription start site region 10590	515 bp upstream
Tssr15648	transcription start site region 15648	129 bp downstream