rs579059189 SNP Detail

Summary

• ID
  rs579059189
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128178928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTC GCCTTATTCT TTTTTTTTTT
  K
  GGGGGTGCAG CGAACTTTAT TGATG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	LP/J	MOLF/EiJ	NZO/HlLtJ	PWK/PhJ	SM/J	ST/bJ
ss918357493	MGP_WTSI_6_128201965	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CZECHII/EiJ	LP/J	MOLF/EiJ	NZO/HlLtJ	PWK/PhJ	SM/J	ST/bJ
rs579059189					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918357493	MGP_WTSI_6_128201965	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128178928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	846 bp distal
Gm4691	predicted gene 4691	185 bp downstream
Gm10010	predicted gene 10010	1275 bp upstream
Gm66766	predicted gene, 66766	within coordinates
Gm68827	predicted gene, 68827	214 bp downstream
Rr399953	regulatory region 399953	1157 bp downstream
Rr639207	regulatory region 639207	1651 bp distal
Rr639208	regulatory region 639208	1394 bp distal
Rr639209	regulatory region 639209	1247 bp distal
Rr639210	regulatory region 639210	204 bp distal
Rr639211	regulatory region 639211	448 bp distal
Tssr63410	transcription start site region 63410	1395 bp upstream
Tssr63411	transcription start site region 63411	1390 bp upstream
Tssr63412	transcription start site region 63412	1373 bp upstream
Tssr63413	transcription start site region 63413	1330 bp upstream
Tssr63414	transcription start site region 63414	1315 bp upstream