rs579085377 SNP Detail

Summary

• ID
  rs579085377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170898280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC GAATATCCTC TGCTCGCCCA
  R
  ACCGCTCCGG GGGCTTGCGT GGGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	ST/bJ
ss915123921	MGP_WTSI_1_171070711	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CE/J	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	ST/bJ
rs579085377					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915123921	MGP_WTSI_1_171070711	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170898280 () rs orientation: forward

Symbol	Name	Function Class
Gm56232	predicted gene, 56232	1515 bp downstream
n-TEctc8	nuclear encoded tRNA glutamic acid 8 (anticodon CTC)	1081 bp downstream
n-TGtcc5	nuclear encoded tRNA glycine 5 (anticodon TCC)	1623 bp downstream
Rr423202	regulatory region 423202	268 bp distal
Rr423203	regulatory region 423203	885 bp proximal
Rr423204	regulatory region 423204	1768 bp proximal