rs579129054 SNP Detail

Summary

• ID
  rs579129054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5912762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATTC TGTGGCCGTC TCTCTACCCT
  K
  CTGGGTATTT TTTTTCCTCC AAGTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss921651397	MGP_WTSI_13_5862763	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579129054					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921651397	MGP_WTSI_13_5862763	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5912762 () rs orientation: forward

Symbol	Name	Function Class
B230207M22Rik	RIKEN cDNA B230207M22 gene	1565 bp upstream
Cpgi5253	CpG island 5253	827 bp distal
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	192 bp downstream
Rr403559	regulatory region 403559	1777 bp upstream
Rr474541	regulatory region 474541	1576 bp distal
Rr474542	regulatory region 474542	1271 bp distal
Rr474543	regulatory region 474543	1122 bp distal
Tssr118237	transcription start site region 118237	1262 bp downstream
Tssr118238	transcription start site region 118238	1237 bp downstream
Tssr118239	transcription start site region 118239	1213 bp downstream
Tssr118240	transcription start site region 118240	1199 bp downstream
Tssr118241	transcription start site region 118241	1126 bp downstream
Tssr118242	transcription start site region 118242	1090 bp downstream
Tssr118243	transcription start site region 118243	888 bp downstream
Tssr118244	transcription start site region 118244	142 bp downstream
Tssr118245	transcription start site region 118245	94 bp upstream
Tssr118246	transcription start site region 118246	1052 bp upstream
Tssr118247	transcription start site region 118247	1118 bp upstream
Tssr118248	transcription start site region 118248	1723 bp upstream
Tssr118249	transcription start site region 118249	1928 bp upstream
Tssr118250	transcription start site region 118250	1987 bp upstream
Tssr121315	transcription start site region 121315	1947 bp upstream
Tssr121316	transcription start site region 121316	1590 bp upstream
Tssr121317	transcription start site region 121317	1559 bp upstream
Tssr121318	transcription start site region 121318	1482 bp upstream
Tssr121319	transcription start site region 121319	1542 bp downstream
Tssr121320	transcription start site region 121320	1566 bp downstream
Tssr121321	transcription start site region 121321	1589 bp downstream
Tssr121322	transcription start site region 121322	1610 bp downstream