rs579176407 SNP Detail

Summary

• ID
  rs579176407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:93354122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA GAGCTCCGCC AGGAGCGCGA
  R
  GAAGAGCGGC TGAGGGACAG AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss916289629	MGP_WTSI_3_93446815	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579176407					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916289629	MGP_WTSI_3_93446815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:93354122 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13475	CpG island 13475	within coordinates
Gm37245	predicted gene, 37245	within coordinates
Gm66249	predicted gene, 66249	within coordinates
Rr580538	regulatory region 580538	1531 bp distal
Rr580539	regulatory region 580539	1038 bp proximal
Tchh	trichohyalin	within coordinates
Tssr962	transcription start site region 962	1689 bp downstream
Tssr963	transcription start site region 963	1653 bp downstream
Tssr964	transcription start site region 964	1554 bp downstream
Tssr30376	transcription start site region 30376	1984 bp downstream
Tssr30377	transcription start site region 30377	1958 bp downstream
Tssr30378	transcription start site region 30378	1936 bp downstream
Tssr30379	transcription start site region 30379	1919 bp downstream
Tssr30380	transcription start site region 30380	1840 bp downstream
Tssr30381	transcription start site region 30381	1823 bp downstream
Tssr30382	transcription start site region 30382	1768 bp downstream
Tssr30383	transcription start site region 30383	1757 bp downstream
Tssr30384	transcription start site region 30384	1748 bp downstream
Tssr30385	transcription start site region 30385	1723 bp downstream
Tssr30386	transcription start site region 30386	1701 bp downstream
Tssr30387	transcription start site region 30387	1607 bp downstream
Tssr30388	transcription start site region 30388	1588 bp downstream
Tssr30389	transcription start site region 30389	1566 bp downstream
Tssr30390	transcription start site region 30390	1495 bp downstream
Tssr30391	transcription start site region 30391	1485 bp downstream
Tssr30392	transcription start site region 30392	1467 bp downstream
Tssr30393	transcription start site region 30393	1456 bp downstream
Tssr30394	transcription start site region 30394	1430 bp downstream
Tssr30395	transcription start site region 30395	1403 bp downstream
Tssr30396	transcription start site region 30396	1353 bp downstream
Tssr30397	transcription start site region 30397	1337 bp downstream
Tssr30398	transcription start site region 30398	1259 bp downstream
Tssr30399	transcription start site region 30399	1180 bp downstream
Tssr30400	transcription start site region 30400	731 bp downstream
Tssr30401	transcription start site region 30401	710 bp downstream
Tssr30402	transcription start site region 30402	610 bp downstream
Tssr30403	transcription start site region 30403	573 bp downstream
Tssr30404	transcription start site region 30404	558 bp upstream
Tssr30405	transcription start site region 30405	669 bp upstream
Tssr30406	transcription start site region 30406	817 bp upstream
Tssr30407	transcription start site region 30407	1012 bp upstream
Tssr34358	transcription start site region 34358	1972 bp upstream
Tssr34359	transcription start site region 34359	1897 bp upstream
Tssr34360	transcription start site region 34360	1852 bp upstream
Tssr34361	transcription start site region 34361	1795 bp upstream
Tssr34362	transcription start site region 34362	1782 bp upstream
Tssr34363	transcription start site region 34363	1757 bp upstream
Tssr34364	transcription start site region 34364	1742 bp upstream
Tssr34365	transcription start site region 34365	1716 bp upstream
Tssr34366	transcription start site region 34366	1648 bp upstream
Tssr34367	transcription start site region 34367	1483 bp upstream
Tssr34368	transcription start site region 34368	1453 bp upstream
Tssr34369	transcription start site region 34369	1427 bp upstream
Tssr34370	transcription start site region 34370	1401 bp upstream
Tssr34371	transcription start site region 34371	1258 bp upstream
Tssr34372	transcription start site region 34372	597 bp upstream
Tssr34373	transcription start site region 34373	561 bp downstream