rs579225894 SNP Detail

Summary

• ID
  rs579225894
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TGCAGAACCC CTCAGGTTCA
  G
  CCCTAGTACT TGTAAGGGAA ACAGC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	WSB/EiJ	ZALENDE/EiJ
ss920693838	MGP_WTSI_11_3122154	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	I/LnJ	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	WSB/EiJ	ZALENDE/EiJ
rs579225894					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920693838	MGP_WTSI_11_3122154	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	1110 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1667 bp upstream
Rr402381	regulatory region 402381	929 bp downstream
Rr441449	regulatory region 441449	within coordinates
Rr441450	regulatory region 441450	765 bp proximal
Rr441451	regulatory region 441451	1172 bp proximal
Rr441452	regulatory region 441452	1331 bp proximal
Rr441453	regulatory region 441453	1878 bp proximal
Tssr100004	transcription start site region 100004	1845 bp upstream
Tssr100005	transcription start site region 100005	1889 bp upstream
Tssr106442	transcription start site region 106442	1751 bp downstream