CTATG GAGGGAGAAA GAGGAAGCGC R CCCCACCAGA GCCCCGCCCC TTCCC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss921106698 | MGP_WTSI_11_116853405 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs579247542 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss921106698 | MGP_WTSI_11_116853405 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | A/G |
Location: Chr11:116744231 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi4197 | CpG island 4197 | within coordinates | ||||||
Mfsd11 | major facilitator superfamily domain containing 11 | within coordinates | ||||||
Rr246191 | regulatory region 246191 | within coordinates | ||||||
Rr403146 | regulatory region 403146 | 110 bp downstream | ||||||
Rr403147 | regulatory region 403147 | 141 bp upstream | ||||||
Srsf2 | serine and arginine-rich splicing factor 2 | 311 bp upstream | ||||||
Tssr106000 | transcription start site region 106000 | 1185 bp downstream | ||||||
Tssr106001 | transcription start site region 106001 | 831 bp downstream | ||||||
Tssr106002 | transcription start site region 106002 | 133 bp downstream | ||||||
Tssr106003 | transcription start site region 106003 | 52 bp upstream | ||||||
Tssr106004 | transcription start site region 106004 | 347 bp upstream | ||||||
Tssr112004 | transcription start site region 112004 | 1930 bp upstream | ||||||
Tssr112005 | transcription start site region 112005 | 1252 bp upstream | ||||||
Tssr112006 | transcription start site region 112006 | 1213 bp upstream | ||||||
Tssr112007 | transcription start site region 112007 | 1147 bp upstream | ||||||
Tssr112008 | transcription start site region 112008 | 1041 bp upstream | ||||||
Tssr112009 | transcription start site region 112009 | 949 bp upstream | ||||||
Tssr112010 | transcription start site region 112010 | 306 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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