rs579250314 SNP Detail

Summary

• ID
  rs579250314
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154729508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG GAGGGAGGGA GGGAGGGAGG
  G
  AGGGAGGGAG GGAGGGAGGG AGGGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	MA/MyJ	PWK/PhJ	SJL/J
ss917164738	MGP_WTSI_4_154645051	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/10SnJ	CZECHII/EiJ	MA/MyJ	PWK/PhJ	SJL/J
rs579250314					SNP	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917164738	MGP_WTSI_4_154645051	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154729508 () rs orientation: forward

Symbol	Name	Function Class
Gm13110	predicted gene 13110	1579 bp downstream
Gm27202	predicted gene 27202	32 bp downstream
Prdm16os	Prdm16 opposite strand transcript	333 bp downstream
Rr606235	regulatory region 606235	1751 bp distal