rs579277156 SNP Detail

Summary

• ID
  rs579277156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:125871048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAC AGCTGCTGCT TCAGCCAGGA
  R
  CCCCCCACCC CCTTCTTCCG TTCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss919038419	MGP_WTSI_7_126271876	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs579277156					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919038419	MGP_WTSI_7_126271876	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:125871048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19689	CpG island 19689	within coordinates
Rr368426	regulatory region 368426	within coordinates
Rr381444	regulatory region 381444	826 bp downstream
Rr655453	regulatory region 655453	253 bp proximal
Sbk1	SH3-binding kinase 1	within coordinates
Tssr69002	transcription start site region 69002	537 bp upstream
Tssr69003	transcription start site region 69003	552 bp upstream
Tssr69004	transcription start site region 69004	568 bp upstream
Tssr69005	transcription start site region 69005	587 bp upstream
Tssr69006	transcription start site region 69006	599 bp upstream
Tssr69007	transcription start site region 69007	630 bp upstream
Tssr69008	transcription start site region 69008	650 bp upstream
Tssr69009	transcription start site region 69009	713 bp upstream
Tssr69010	transcription start site region 69010	908 bp upstream
Tssr69011	transcription start site region 69011	971 bp upstream