rs579339014 SNP Detail

Summary

• ID
  rs579339014
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54688360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGTGT GTCTGTGTGT
  C
  TGTGTGTCTG TGTGTGTGTA TGTGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
ss922322565	MGP_WTSI_14_54450903	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J
rs579339014					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922322565	MGP_WTSI_14_54450903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54688360 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6457	CpG island 6457	1359 bp distal
Gm24424	predicted gene, 24424	839 bp upstream
Rr289213	regulatory region 289213	1960 bp distal
Rr289214	regulatory region 289214	1160 bp distal
Rr297196	regulatory region 297196	1359 bp distal
Rr389675	regulatory region 389675	1243 bp upstream
Rr404097	regulatory region 404097	1529 bp downstream