rs579346189 SNP Detail

Summary

• ID
  rs579346189
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106697980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT TCTTTCTTTC TTTCTTGCTT
  G
  CTTGCTTGCT TGCTTGCTTG CTTGC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	ZALENDE/EiJ
ss920011730	MGP_WTSI_9_106820781	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	RF/J	ZALENDE/EiJ
rs579346189					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920011730	MGP_WTSI_9_106820781	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106697980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22276	CpG island 22276	784 bp proximal
Dcaf1	DDB1 and CUL4 associated factor 1	1093 bp upstream
Rr368848	regulatory region 368848	826 bp upstream
Rr401655	regulatory region 401655	1665 bp upstream
Rr686399	regulatory region 686399	1274 bp distal
Rr686400	regulatory region 686400	1371 bp distal
Rr686401	regulatory region 686401	909 bp distal
Rr686402	regulatory region 686402	603 bp proximal
Rr686403	regulatory region 686403	1104 bp proximal
Tssr86935	transcription start site region 86935	1113 bp upstream
Tssr86936	transcription start site region 86936	1218 bp upstream
Tssr86937	transcription start site region 86937	1242 bp upstream