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rs579365992 SNP Detail
Summary
  • ID
    rs579365992
  • Variation Type
    SNP
  • Alleles
    T
Genome Location and Flanking Sequence
  • Location
    Chr1:149978232 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CAACA GTCGTATTGA TGTTGTGATC
T
TCTTTGAGAC GGTGCTTCTA AGTGA                                      

T = T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss915059782 MGP_WTSI_1_150102481 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579365992 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss915059782 MGP_WTSI_1_150102481 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149978232 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Tssr242 transcription start site region 242 319 bp upstream
Tssr9223 transcription start site region 9223 1532 bp downstream
Tssr9224 transcription start site region 9224 1424 bp downstream
Tssr9225 transcription start site region 9225 1299 bp downstream
Tssr9226 transcription start site region 9226 1286 bp downstream
Tssr9227 transcription start site region 9227 1208 bp downstream
Tssr9228 transcription start site region 9228 1168 bp downstream
Tssr9229 transcription start site region 9229 1155 bp downstream
Tssr9230 transcription start site region 9230 368 bp downstream
Tssr9231 transcription start site region 9231 335 bp downstream
Tssr9232 transcription start site region 9232 292 bp downstream
Tssr9233 transcription start site region 9233 161 bp upstream
Tssr9234 transcription start site region 9234 165 bp upstream
Tssr9235 transcription start site region 9235 205 bp upstream
Tssr9236 transcription start site region 9236 242 bp upstream
Tssr9237 transcription start site region 9237 261 bp upstream
Tssr9238 transcription start site region 9238 290 bp upstream
Tssr9239 transcription start site region 9239 331 bp upstream
Tssr9240 transcription start site region 9240 353 bp upstream
Tssr9241 transcription start site region 9241 379 bp upstream
Tssr9242 transcription start site region 9242 399 bp upstream
Tssr9243 transcription start site region 9243 523 bp upstream
Tssr9244 transcription start site region 9244 568 bp upstream
Tssr9245 transcription start site region 9245 588 bp upstream
Tssr9246 transcription start site region 9246 625 bp upstream
Tssr9247 transcription start site region 9247 764 bp upstream
Tssr9248 transcription start site region 9248 1184 bp upstream
Tssr9249 transcription start site region 9249 1211 bp upstream
Tssr9250 transcription start site region 9250 1379 bp upstream
Tssr9251 transcription start site region 9251 1425 bp upstream
Tssr9252 transcription start site region 9252 1480 bp upstream
Tssr9253 transcription start site region 9253 1510 bp upstream
Tssr9254 transcription start site region 9254 1537 bp upstream
Tssr9255 transcription start site region 9255 1556 bp upstream
Tssr9256 transcription start site region 9256 1796 bp upstream
Tssr9257 transcription start site region 9257 1820 bp upstream
Tssr9258 transcription start site region 9258 1843 bp upstream
Tssr9259 transcription start site region 9259 1868 bp upstream
Tssr9260 transcription start site region 9260 1923 bp upstream
Tssr9261 transcription start site region 9261 1978 bp upstream
Tssr9262 transcription start site region 9262 1986 bp upstream
Tssr14130 transcription start site region 14130 1219 bp upstream
Tssr14131 transcription start site region 14131 1163 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory