rs579369168 SNP Detail

Summary

• ID
  rs579369168
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:69726195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG AGGGACAGAG AGAGAGAGAG
  G
  GAGAGAGAGA GAGAGAGAGA GAGAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss924039684	MGP_WTSI_18_69593124	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs579369168					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924039684	MGP_WTSI_18_69593124	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:69726195 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10192	CpG island 10192	306 bp distal
Cpgi10193	CpG island 10193	94 bp proximal
Rr405727	regulatory region 405727	143 bp upstream
Rr540217	regulatory region 540217	1627 bp distal
Rr540218	regulatory region 540218	within coordinates
Tcf4	transcription factor 4	within coordinates
Tssr151833	transcription start site region 151833	275 bp downstream
Tssr151834	transcription start site region 151834	171 bp downstream
Tssr151835	transcription start site region 151835	153 bp downstream
Tssr151836	transcription start site region 151836	113 bp downstream
Tssr151837	transcription start site region 151837	86 bp upstream
Tssr151838	transcription start site region 151838	134 bp upstream
Tssr151839	transcription start site region 151839	237 bp upstream
Tssr151840	transcription start site region 151840	330 bp upstream
Tssr151841	transcription start site region 151841	367 bp upstream
Tssr151842	transcription start site region 151842	390 bp upstream
Tssr151843	transcription start site region 151843	422 bp upstream
Tssr151844	transcription start site region 151844	459 bp upstream
Tssr151845	transcription start site region 151845	500 bp upstream
Tssr153821	transcription start site region 153821	168 bp downstream