rs579397796 SNP Detail

Summary

• ID
  rs579397796
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122825987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG AAAAAACAGT AAACCAAGCA
  A
  CCAAGCAACC AACCAACCAA CCAAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918335627	MGP_WTSI_6_122849028	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579397796					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918335627	MGP_WTSI_6_122849028	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122825987 () rs orientation: forward

Symbol	Name	Function Class
C3ar1	complement component 3a receptor 1	within coordinates
Tssr58709	transcription start site region 58709	1052 bp downstream
Tssr58710	transcription start site region 58710	832 bp downstream
Tssr58711	transcription start site region 58711	1429 bp upstream
Tssr58712	transcription start site region 58712	1547 bp upstream
Tssr58713	transcription start site region 58713	1603 bp upstream
Tssr62966	transcription start site region 62966	1242 bp upstream
Tssr62967	transcription start site region 62967	1197 bp upstream
Tssr62968	transcription start site region 62968	1149 bp upstream
Tssr62969	transcription start site region 62969	829 bp upstream
Tssr62970	transcription start site region 62970	809 bp upstream
Tssr62971	transcription start site region 62971	749 bp upstream
Tssr62972	transcription start site region 62972	649 bp upstream
Tssr62973	transcription start site region 62973	588 bp upstream
Tssr62974	transcription start site region 62974	502 bp upstream
Tssr62975	transcription start site region 62975	417 bp upstream
Tssr62976	transcription start site region 62976	328 bp upstream
Tssr62977	transcription start site region 62977	270 bp upstream
Tssr62978	transcription start site region 62978	216 bp upstream
Tssr62979	transcription start site region 62979	183 bp upstream
Tssr62980	transcription start site region 62980	167 bp upstream
Tssr62981	transcription start site region 62981	148 bp upstream
Tssr62982	transcription start site region 62982	1 bp downstream
Tssr62983	transcription start site region 62983	458 bp downstream
Tssr62984	transcription start site region 62984	528 bp downstream
Tssr62985	transcription start site region 62985	571 bp downstream
Tssr62986	transcription start site region 62986	882 bp downstream
Tssr62987	transcription start site region 62987	1012 bp downstream
Tssr62988	transcription start site region 62988	1080 bp downstream
Tssr62989	transcription start site region 62989	1239 bp downstream
Tssr62990	transcription start site region 62990	1285 bp downstream
Tssr62991	transcription start site region 62991	1312 bp downstream
Tssr62992	transcription start site region 62992	1337 bp downstream
Tssr62993	transcription start site region 62993	1431 bp downstream
Tssr62994	transcription start site region 62994	1537 bp downstream
Tssr62995	transcription start site region 62995	1654 bp downstream
Tssr62996	transcription start site region 62996	1714 bp downstream
Tssr62997	transcription start site region 62997	1856 bp downstream
Tssr62998	transcription start site region 62998	1911 bp downstream
Tssr62999	transcription start site region 62999	1982 bp downstream