rs579398694 SNP Detail

Summary

• ID
  rs579398694
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15727752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGA ACATGACACC CTCAGTGTAG
  M
  CATTTTTACT ATATTAATCC CACCA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BR/cdJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J
ss917237298	MGP_WTSI_5_15522754	EVA_MGPV3	EVA_MGPV3	f	SNP	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BR/cdJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SWR/J
rs579398694					SNP	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917237298	MGP_WTSI_5_15522754	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15727752 () rs orientation: forward

Symbol	Name	Function Class
Gm21190	predicted gene, 21190	1702 bp downstream
Gm21847	predicted gene, 21847	within coordinates
Rr607454	regulatory region 607454	within coordinates
Rr607455	regulatory region 607455	82 bp distal