rs579402636 SNP Detail

Summary

• ID
  rs579402636
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77740054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TATATATATT ATATATATAT
  M
  TATATATATA GTTAGAAGTG GCTGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
ss920485984	MGP_WTSI_10_77904220	EVA_MGPV3	EVA_MGPV3	f	SNP	C	A	A	A	A	A	A	C	A	A	C	C	C	A	C	A	A	C	A	C	A	A	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BR/cdJ	C58/J	CZECHII/EiJ	DBA/1J	I/LnJ	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	ZALENDE/EiJ
rs579402636					SNP	C	A	A	A	A	A	A	C	A	A	C	C	C	A	C	A	A	C	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss920485984	MGP_WTSI_10_77904220	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77740054 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	797 bp distal
Gm53590	predicted gene, 53590	within coordinates
Gm66732	predicted gene, 66732	within coordinates
Gm66819	predicted gene, 66819	821 bp downstream
Lrrc3	leucine rich repeat containing 3	1684 bp upstream
Rr434596	regulatory region 434596	1834 bp distal
Rr434597	regulatory region 434597	1695 bp distal
Rr434598	regulatory region 434598	713 bp distal
Rr434599	regulatory region 434599	449 bp distal
Tssr98252	transcription start site region 98252	1759 bp upstream
Tssr98253	transcription start site region 98253	1691 bp upstream