rs579416278 SNP Detail

Summary

• ID
  rs579416278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30307285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAA CTCACTCTGT AGACCAGGCT
  R
  GCCTCGAACT CAGAAATCCA CCTGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss915334606	MGP_WTSI_2_30417273	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579416278					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915334606	MGP_WTSI_2_30417273	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30307285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	594 bp distal
Crat	carnitine acetyltransferase	1683 bp upstream
Gm16323	predicted gene 16323	1935 bp downstream
Ptpa	protein phosphatase 2 protein activator	within coordinates
Rr554312	regulatory region 554312	1760 bp distal
Rr554313	regulatory region 554313	1121 bp distal
Rr554314	regulatory region 554314	within coordinates
Rr554315	regulatory region 554315	1774 bp proximal
Tssr17115	transcription start site region 17115	1590 bp downstream
Tssr17116	transcription start site region 17116	1196 bp downstream
Tssr17117	transcription start site region 17117	1183 bp downstream
Tssr17118	transcription start site region 17118	1126 bp downstream
Tssr17119	transcription start site region 17119	1052 bp downstream
Tssr23371	transcription start site region 23371	1905 bp upstream
Tssr23372	transcription start site region 23372	1863 bp upstream
Tssr23373	transcription start site region 23373	1844 bp upstream
Tssr23374	transcription start site region 23374	1824 bp upstream
Tssr23375	transcription start site region 23375	1768 bp upstream
Tssr23376	transcription start site region 23376	1713 bp upstream
Tssr23377	transcription start site region 23377	1661 bp upstream
Tssr23378	transcription start site region 23378	1649 bp upstream
Tssr23379	transcription start site region 23379	1565 bp upstream
Tssr23380	transcription start site region 23380	1499 bp upstream
Tssr23381	transcription start site region 23381	1228 bp upstream