rs579429363 SNP Detail

Summary

• ID
  rs579429363
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23735932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC TGACTACTAA AAATAAGGCT
  K
  CTATGAACAA AATGGAGCAT GTTTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	SWR/J
ss923483375	MGP_WTSI_17_23516958	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	SWR/J
rs579429363					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923483375	MGP_WTSI_17_23516958	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23735932 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	1174 bp downstream
Rr329666	regulatory region 329666	1132 bp distal