rs579435590 SNP Detail

Summary

• ID
  rs579435590
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AGGTGAGGAA CACCACAGTG
  M
  ATGAGGACAG AGGAATGATA GAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss917727662	MGP_WTSI_5_137148782	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	C	A	A	A	A	A	C	C	C	C	A	C	C	C	A	A	A	A	A	A	A	C	C	A	A	C	A	C	A	C	C	A	A	A	C	A	A	C	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs579435590					SNP	A	A	A	A	C	A	A	A	A	A	C	C	C	C	A	C	C	C	A	A	A	A	A	A	A	C	C	A	A	C	A	C	A	C	C	A	A	A	C	A	A	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917727662	MGP_WTSI_5_137148782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177630 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	477 bp downstream
Tssr1678	transcription start site region 1678	1702 bp downstream
Tssr49309	transcription start site region 49309	996 bp upstream
Tssr49310	transcription start site region 49310	1356 bp upstream
Tssr49311	transcription start site region 49311	1370 bp upstream
Tssr49312	transcription start site region 49312	1750 bp upstream
Tssr49313	transcription start site region 49313	1998 bp upstream
Tssr53919	transcription start site region 53919	856 bp downstream
Tssr53920	transcription start site region 53920	872 bp downstream
Tssr53921	transcription start site region 53921	1027 bp downstream
Tssr53922	transcription start site region 53922	1068 bp downstream
Tssr53923	transcription start site region 53923	1109 bp downstream
Tssr53924	transcription start site region 53924	1123 bp downstream
Tssr53925	transcription start site region 53925	1161 bp downstream
Tssr53926	transcription start site region 53926	1192 bp downstream
Tssr53927	transcription start site region 53927	1341 bp downstream
Tssr53928	transcription start site region 53928	1359 bp downstream
Tssr53929	transcription start site region 53929	1396 bp downstream
Tssr53930	transcription start site region 53930	1461 bp downstream
Tssr53931	transcription start site region 53931	1486 bp downstream
Tssr53932	transcription start site region 53932	1502 bp downstream
Tssr53933	transcription start site region 53933	1540 bp downstream
Tssr53934	transcription start site region 53934	1572 bp downstream
Tssr53935	transcription start site region 53935	1623 bp downstream
Tssr53936	transcription start site region 53936	1644 bp downstream
Tssr53937	transcription start site region 53937	1734 bp downstream
Tssr53938	transcription start site region 53938	1770 bp downstream
Tssr53939	transcription start site region 53939	1824 bp downstream
Tssr53940	transcription start site region 53940	2000 bp downstream