rs579467040 SNP Detail

Summary

• ID
  rs579467040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:85967723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC CAAACTAGCC CTTTCTTTCT
  Y
  TCTTTCTTTC TTTCTTTCTT TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	PL/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
ss914775893	MGP_WTSI_1_86040001	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	DBA/1J	DBA/2J	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	PL/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	WSB/EiJ
rs579467040					SNP	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914775893	MGP_WTSI_1_86040001	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85967723 () rs orientation: forward

Symbol	Name	Function Class
Rr414457	regulatory region 414457	975 bp distal
Rr414458	regulatory region 414458	107 bp proximal
Tssr140	transcription start site region 140	339 bp downstream
Tssr7715	transcription start site region 7715	358 bp downstream
Tssr7716	transcription start site region 7716	327 bp downstream