rs579494380 SNP Detail

Summary

• ID
  rs579494380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT CCTGTAGAGA TTGATTTGAA
  R
  ACAAAGATTC AAATATTCAA GACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss918579986	MGP_WTSI_7_19695581	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579494380					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918579986	MGP_WTSI_7_19695581	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429506 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	528 bp downstream
Cpgi18507	CpG island 18507	940 bp proximal
Gm71725	predicted gene, 71725	1537 bp upstream
Rr643239	regulatory region 643239	45 bp distal
Rr643240	regulatory region 643240	870 bp proximal
Rr643241	regulatory region 643241	1055 bp proximal
Tssr2112	transcription start site region 2112	870 bp upstream
Tssr2113	transcription start site region 2113	895 bp upstream
Tssr2114	transcription start site region 2114	1010 bp upstream
Tssr2115	transcription start site region 2115	1046 bp upstream
Tssr2116	transcription start site region 2116	1121 bp upstream
Tssr2117	transcription start site region 2117	1143 bp upstream
Tssr2118	transcription start site region 2118	1250 bp upstream
Tssr2119	transcription start site region 2119	1259 bp downstream
Tssr2120	transcription start site region 2120	1322 bp upstream
Tssr2121	transcription start site region 2121	1354 bp upstream
Tssr64880	transcription start site region 64880	687 bp upstream
Tssr64881	transcription start site region 64881	739 bp upstream
Tssr64882	transcription start site region 64882	783 bp upstream
Tssr64883	transcription start site region 64883	821 bp upstream
Tssr64884	transcription start site region 64884	848 bp upstream
Tssr64885	transcription start site region 64885	927 bp upstream
Tssr64886	transcription start site region 64886	948 bp upstream
Tssr64887	transcription start site region 64887	980 bp upstream
Tssr64888	transcription start site region 64888	1199 bp upstream
Tssr64889	transcription start site region 64889	1293 bp upstream
Tssr64890	transcription start site region 64890	1339 bp upstream
Tssr64891	transcription start site region 64891	1362 bp upstream
Tssr64892	transcription start site region 64892	1395 bp upstream
Tssr64893	transcription start site region 64893	1430 bp upstream
Tssr64894	transcription start site region 64894	1884 bp upstream
Tssr64895	transcription start site region 64895	1980 bp upstream
Tssr70973	transcription start site region 70973	711 bp downstream
Tssr70974	transcription start site region 70974	757 bp downstream
Tssr70975	transcription start site region 70975	785 bp downstream
Tssr70976	transcription start site region 70976	820 bp downstream
Tssr70977	transcription start site region 70977	868 bp downstream
Tssr70978	transcription start site region 70978	883 bp downstream
Tssr70979	transcription start site region 70979	907 bp downstream
Tssr70980	transcription start site region 70980	917 bp downstream
Tssr70981	transcription start site region 70981	938 bp downstream
Tssr70982	transcription start site region 70982	952 bp downstream
Tssr70983	transcription start site region 70983	985 bp downstream
Tssr70984	transcription start site region 70984	1002 bp downstream
Tssr70985	transcription start site region 70985	1067 bp downstream
Tssr70986	transcription start site region 70986	1100 bp downstream
Tssr70987	transcription start site region 70987	1130 bp downstream
Tssr70988	transcription start site region 70988	1174 bp downstream
Tssr70989	transcription start site region 70989	1213 bp downstream
Tssr70990	transcription start site region 70990	1225 bp downstream
Tssr70991	transcription start site region 70991	1270 bp downstream
Tssr70992	transcription start site region 70992	1278 bp downstream
Tssr70993	transcription start site region 70993	1287 bp downstream
Tssr70994	transcription start site region 70994	1328 bp downstream
Tssr70995	transcription start site region 70995	1333 bp downstream
Tssr70996	transcription start site region 70996	1366 bp downstream
Tssr70997	transcription start site region 70997	1400 bp downstream
Tssr70998	transcription start site region 70998	1462 bp downstream
Tssr70999	transcription start site region 70999	1480 bp downstream
Tssr71000	transcription start site region 71000	1923 bp downstream
Tssr71001	transcription start site region 71001	1953 bp downstream