rs579511281 SNP Detail

Summary

• ID
  rs579511281
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24927508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCT GTCTCGAAAA ACCAAAAAAA
  W
  AAAAATAATA AATAATAAAT AAAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss923487778	MGP_WTSI_17_24708534	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	T	T	T	T	T	T	A	T	T	A	A	T	A	T	T	T	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs579511281					SNP	A	A	A	T	T	T	T	T	T	T	A	T	T	A	A	T	A	T	T	T	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923487778	MGP_WTSI_17_24708534	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24927508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	628 bp distal
Rr392440	regulatory region 392440	1707 bp upstream
Rr405091	regulatory region 405091	682 bp downstream
Rr523395	regulatory region 523395	885 bp distal
Rr523396	regulatory region 523396	384 bp distal
Rr523397	regulatory region 523397	126 bp proximal
Rr523398	regulatory region 523398	328 bp proximal
Tbl3	transducin (beta)-like 3	881 bp upstream
Tssr146772	transcription start site region 146772	924 bp upstream
Tssr146773	transcription start site region 146773	873 bp upstream