rs579532368 SNP Detail

Summary

• ID
  rs579532368
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90620702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACT GAGTTGAAAG AGTGTCAAAA
  W
  TTTTTGTCTC TGTGAAAAAA TTTTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss917557378	MGP_WTSI_5_90472843	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs579532368					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917557378	MGP_WTSI_5_90472843	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90620702 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123611	regulatory region 123611	1984 bp distal
Rr123612	regulatory region 123612	1732 bp distal
Rr123613	regulatory region 123613	531 bp distal
Rr123614	regulatory region 123614	230 bp distal
Rr123615	regulatory region 123615	1069 bp proximal
Tssr1538	transcription start site region 1538	723 bp downstream
Tssr1539	transcription start site region 1539	718 bp upstream
Tssr47111	transcription start site region 47111	1023 bp downstream
Tssr47112	transcription start site region 47112	791 bp downstream
Tssr47113	transcription start site region 47113	770 bp downstream
Tssr47114	transcription start site region 47114	735 bp downstream
Tssr47115	transcription start site region 47115	362 bp downstream
Tssr47116	transcription start site region 47116	337 bp downstream
Tssr47117	transcription start site region 47117	304 bp downstream
Tssr47118	transcription start site region 47118	268 bp downstream
Tssr47119	transcription start site region 47119	238 bp downstream
Tssr47120	transcription start site region 47120	1715 bp upstream
Tssr51769	transcription start site region 51769	1999 bp upstream
Tssr51770	transcription start site region 51770	740 bp upstream
Tssr51771	transcription start site region 51771	282 bp upstream
Tssr51772	transcription start site region 51772	157 bp upstream
Tssr51773	transcription start site region 51773	1768 bp downstream
Tssr51774	transcription start site region 51774	1826 bp downstream