rs579548909 SNP Detail

Summary

• ID
  rs579548909
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72712591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA CATACACACA CACTCACACA
  C
  ACACACACAC ACACACACAC ACACA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	MA/MyJ	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss919886478	MGP_WTSI_9_72805309	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	MA/MyJ	RIIIS/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs579548909					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919886478	MGP_WTSI_9_72805309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72712591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22020	CpG island 22020	1424 bp proximal
Prtg	protogenin	1965 bp upstream
Rr206710	regulatory region 206710	809 bp proximal
Tssr86048	transcription start site region 86048	1823 bp upstream
Tssr86049	transcription start site region 86049	1850 bp upstream
Tssr86050	transcription start site region 86050	1884 bp upstream
Tssr86051	transcription start site region 86051	1913 bp upstream
Tssr86052	transcription start site region 86052	1992 bp upstream