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rs579554417 SNP Detail
Summary
  • ID
    rs579554417
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149979222 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AGTCA GTTCTAGGAG ATTCCATGTT
W
TGTAACATTT TAGGGCACCA GACAA                                      

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss915059788 MGP_WTSI_1_150103471 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579554417 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss915059788 MGP_WTSI_1_150103471 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149979222 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Rr12935 regulatory region 12935 779 bp proximal
Rr24983 regulatory region 24983 811 bp proximal
Rr31002 regulatory region 31002 1822 bp distal
Tssr242 transcription start site region 242 666 bp downstream
Tssr9230 transcription start site region 9230 1358 bp downstream
Tssr9231 transcription start site region 9231 1325 bp downstream
Tssr9232 transcription start site region 9232 1282 bp downstream
Tssr9233 transcription start site region 9233 826 bp downstream
Tssr9234 transcription start site region 9234 797 bp downstream
Tssr9235 transcription start site region 9235 766 bp downstream
Tssr9236 transcription start site region 9236 741 bp downstream
Tssr9237 transcription start site region 9237 709 bp downstream
Tssr9238 transcription start site region 9238 678 bp downstream
Tssr9239 transcription start site region 9239 644 bp downstream
Tssr9240 transcription start site region 9240 630 bp downstream
Tssr9241 transcription start site region 9241 600 bp downstream
Tssr9242 transcription start site region 9242 584 bp downstream
Tssr9243 transcription start site region 9243 457 bp downstream
Tssr9244 transcription start site region 9244 406 bp downstream
Tssr9245 transcription start site region 9245 370 bp downstream
Tssr9246 transcription start site region 9246 351 bp downstream
Tssr9247 transcription start site region 9247 216 bp downstream
Tssr9248 transcription start site region 9248 194 bp upstream
Tssr9249 transcription start site region 9249 221 bp upstream
Tssr9250 transcription start site region 9250 389 bp upstream
Tssr9251 transcription start site region 9251 435 bp upstream
Tssr9252 transcription start site region 9252 490 bp upstream
Tssr9253 transcription start site region 9253 520 bp upstream
Tssr9254 transcription start site region 9254 547 bp upstream
Tssr9255 transcription start site region 9255 566 bp upstream
Tssr9256 transcription start site region 9256 806 bp upstream
Tssr9257 transcription start site region 9257 830 bp upstream
Tssr9258 transcription start site region 9258 853 bp upstream
Tssr9259 transcription start site region 9259 878 bp upstream
Tssr9260 transcription start site region 9260 933 bp upstream
Tssr9261 transcription start site region 9261 988 bp upstream
Tssr9262 transcription start site region 9262 996 bp upstream
Tssr9263 transcription start site region 9263 1018 bp upstream
Tssr9264 transcription start site region 9264 1063 bp upstream
Tssr9265 transcription start site region 9265 1094 bp upstream
Tssr9266 transcription start site region 9266 1183 bp upstream
Tssr9267 transcription start site region 9267 1474 bp upstream
Tssr9268 transcription start site region 9268 1530 bp upstream
Tssr9269 transcription start site region 9269 1913 bp upstream
Tssr9270 transcription start site region 9270 1953 bp upstream
Tssr9271 transcription start site region 9271 1977 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory