rs579566046 SNP Detail

Summary

• ID
  rs579566046
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTA GAATGCTTGC CCAACACATA
  Y
  CCCAGCAGCA CCGGGAGTGG TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss924302990	MGP_WTSI_19_46396178	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	T	T	C	C	C	C	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579566046					SNP	C	C	C	C	T	T	T	C	C	C	C	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	C	T	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924302990	MGP_WTSI_19_46396178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384617 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	437 bp upstream
Cpgi11001	CpG island 11001	276 bp distal
Cpgi11002	CpG island 11002	512 bp proximal
Gm59146	predicted gene, 59146	21 bp downstream
Rr405999	regulatory region 405999	838 bp downstream
Rr406000	regulatory region 406000	194 bp downstream
Rr406001	regulatory region 406001	448 bp upstream
Rr548727	regulatory region 548727	1075 bp distal
Rr548728	regulatory region 548728	451 bp distal
Rr548729	regulatory region 548729	within coordinates
Rr548730	regulatory region 548730	228 bp proximal
Rr548731	regulatory region 548731	563 bp proximal
Rr548732	regulatory region 548732	671 bp proximal
Rr548733	regulatory region 548733	1383 bp proximal
Rr548734	regulatory region 548734	1425 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	718 bp upstream
Tssr156751	transcription start site region 156751	813 bp downstream
Tssr156752	transcription start site region 156752	785 bp downstream
Tssr156753	transcription start site region 156753	707 bp upstream
Tssr156754	transcription start site region 156754	831 bp upstream
Tssr159650	transcription start site region 159650	422 bp upstream