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rs579584743 SNP Detail
Summary
  • ID
    rs579584743
  • Variation Type
    SNP
  • Alleles
    A/G/T
Genome Location and Flanking Sequence
  • Location
    Chr5:137178811 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TTGTG ATTTCAGGTG TGGTGGTGAC
D
TCAGCAGTGA TGGTGACATC ACCAG                                      

D = A/G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
B10.RIII-H2 H2-T18/(71NS)SnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
JF1/MsJ
MOLF/EiJ
NON/ShiLtJ
PL/J
RIIIS/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
ss917727711 MGP_WTSI_5_137149963 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A G A T
SNP Consensus Information
SNP Consensus Type
B10.RIII-H2 H2-T18/(71NS)SnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
JF1/MsJ
MOLF/EiJ
NON/ShiLtJ
PL/J
RIIIS/J
SM/J
SPRET/EiJ
ST/bJ
ZALENDE/EiJ
rs579584743 SNP A A A A A A A A A A A A A G A T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss917727711 MGP_WTSI_5_137149963 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:137178811 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Muc17 mucin 17, cell surface associated within coordinates
Tssr1677 transcription start site region 1677 695 bp upstream
Tssr1678 transcription start site region 1678 521 bp downstream
Tssr1679 transcription start site region 1679 1464 bp downstream
Tssr1680 transcription start site region 1680 1484 bp upstream
Tssr1681 transcription start site region 1681 1507 bp downstream
Tssr1682 transcription start site region 1682 1524 bp downstream
Tssr1683 transcription start site region 1683 1613 bp downstream
Tssr1684 transcription start site region 1684 1629 bp downstream
Tssr1685 transcription start site region 1685 1643 bp upstream
Tssr1686 transcription start site region 1686 1670 bp downstream
Tssr1687 transcription start site region 1687 1721 bp downstream
Tssr1688 transcription start site region 1688 1745 bp downstream
Tssr1689 transcription start site region 1689 1764 bp upstream
Tssr1690 transcription start site region 1690 1931 bp upstream
Tssr1691 transcription start site region 1691 1935 bp downstream
Tssr49309 transcription start site region 49309 162 bp downstream
Tssr49310 transcription start site region 49310 175 bp upstream
Tssr49311 transcription start site region 49311 189 bp upstream
Tssr49312 transcription start site region 49312 569 bp upstream
Tssr49313 transcription start site region 49313 817 bp upstream
Tssr49314 transcription start site region 49314 1088 bp upstream
Tssr49315 transcription start site region 49315 1104 bp upstream
Tssr53919 transcription start site region 53919 315 bp upstream
Tssr53920 transcription start site region 53920 280 bp upstream
Tssr53921 transcription start site region 53921 122 bp upstream
Tssr53922 transcription start site region 53922 106 bp upstream
Tssr53923 transcription start site region 53923 64 bp upstream
Tssr53924 transcription start site region 53924 45 bp upstream
Tssr53925 transcription start site region 53925 13 bp upstream
Tssr53926 transcription start site region 53926 11 bp downstream
Tssr53927 transcription start site region 53927 160 bp downstream
Tssr53928 transcription start site region 53928 178 bp downstream
Tssr53929 transcription start site region 53929 215 bp downstream
Tssr53930 transcription start site region 53930 280 bp downstream
Tssr53931 transcription start site region 53931 305 bp downstream
Tssr53932 transcription start site region 53932 321 bp downstream
Tssr53933 transcription start site region 53933 359 bp downstream
Tssr53934 transcription start site region 53934 391 bp downstream
Tssr53935 transcription start site region 53935 442 bp downstream
Tssr53936 transcription start site region 53936 463 bp downstream
Tssr53937 transcription start site region 53937 553 bp downstream
Tssr53938 transcription start site region 53938 589 bp downstream
Tssr53939 transcription start site region 53939 643 bp downstream
Tssr53940 transcription start site region 53940 819 bp downstream
Tssr53941 transcription start site region 53941 859 bp downstream
Tssr53942 transcription start site region 53942 918 bp downstream
Tssr53943 transcription start site region 53943 1083 bp downstream
Tssr53944 transcription start site region 53944 1132 bp downstream
Tssr53945 transcription start site region 53945 1142 bp downstream
Tssr53946 transcription start site region 53946 1163 bp downstream
Tssr53947 transcription start site region 53947 1271 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory