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rs579598309 SNP Detail
Summary
  • ID
    rs579598309
  • Variation Type
    SNP
  • Alleles
    C
Genome Location and Flanking Sequence
  • Location
    Chr15:62010176 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CTTCC TTCCTTCCTT CCTTCCTTCC
    C
    TCCTTCCCTC CCTCCCTCCC TCCCT                                      
    
    C = C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
CBA/J
CE/J
FVB/NJ
KK/HlJ
LEWES/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
QSi3/Ianm
RIIIS/J
SEA/GnJ
ST/bJ
ss922852926 MGP_WTSI_15_62138327 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
CBA/J
CE/J
FVB/NJ
KK/HlJ
LEWES/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
QSi3/Ianm
RIIIS/J
SEA/GnJ
ST/bJ
rs579598309 SNP C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss922852926 MGP_WTSI_15_62138327 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:62010176 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pvt1 Pvt1 oncogene within coordinates
Rr303301 regulatory region 303301 776 bp distal
Rr313892 regulatory region 313892 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory