rs579603395 SNP Detail

Summary

• ID
  rs579603395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128518284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG AAAGAAAGAA AGAAAGAAAG
  R
  AAGAAAGAAA GAAAGAAAGA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss914971765	MGP_WTSI_1_128590547	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs579603395					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914971765	MGP_WTSI_1_128590547	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128518284 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	237 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Gm57160	predicted gene, 57160	1828 bp upstream
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	536 bp upstream
Rr396264	regulatory region 396264	1605 bp upstream
Tssr196	transcription start site region 196	1689 bp downstream
Tssr8536	transcription start site region 8536	407 bp upstream
Tssr8537	transcription start site region 8537	730 bp upstream
Tssr8538	transcription start site region 8538	758 bp upstream
Tssr8539	transcription start site region 8539	772 bp upstream
Tssr8540	transcription start site region 8540	1898 bp upstream
Tssr13462	transcription start site region 13462	1915 bp upstream
Tssr13463	transcription start site region 13463	1815 bp upstream
Tssr13464	transcription start site region 13464	1773 bp upstream
Tssr13465	transcription start site region 13465	1760 bp upstream
Tssr13466	transcription start site region 13466	1689 bp upstream
Tssr13467	transcription start site region 13467	1647 bp upstream
Tssr13468	transcription start site region 13468	1561 bp upstream
Tssr13469	transcription start site region 13469	1507 bp upstream
Tssr13470	transcription start site region 13470	1417 bp upstream
Tssr13471	transcription start site region 13471	1345 bp upstream
Tssr13472	transcription start site region 13472	1277 bp upstream
Tssr13473	transcription start site region 13473	1262 bp upstream
Tssr13474	transcription start site region 13474	1201 bp upstream
Tssr13475	transcription start site region 13475	1180 bp upstream
Tssr13476	transcription start site region 13476	1168 bp upstream
Tssr13477	transcription start site region 13477	1102 bp upstream
Tssr13478	transcription start site region 13478	269 bp downstream
Tssr13479	transcription start site region 13479	298 bp downstream
Tssr13480	transcription start site region 13480	620 bp downstream
Tssr13481	transcription start site region 13481	1737 bp downstream