rs579607004 SNP Detail

Summary

• ID
  rs579607004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87841793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATA GATAGATAGA TAGATAGATA
  R
  ATAGATAGAT AGATAGTTTC CCTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917545954	MGP_WTSI_5_87693934	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579607004					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917545954	MGP_WTSI_5_87693934	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87841793 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	within coordinates
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	within coordinates
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	34 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	71 bp distal
Tssr1529	transcription start site region 1529	620 bp upstream
Tssr46883	transcription start site region 46883	567 bp upstream
Tssr46884	transcription start site region 46884	580 bp upstream
Tssr46885	transcription start site region 46885	608 bp upstream
Tssr46886	transcription start site region 46886	636 bp upstream
Tssr46887	transcription start site region 46887	653 bp upstream
Tssr46888	transcription start site region 46888	722 bp upstream
Tssr46889	transcription start site region 46889	771 bp upstream
Tssr46890	transcription start site region 46890	786 bp upstream
Tssr46891	transcription start site region 46891	830 bp upstream
Tssr46892	transcription start site region 46892	834 bp upstream
Tssr46893	transcription start site region 46893	862 bp upstream
Tssr46894	transcription start site region 46894	909 bp upstream
Tssr46895	transcription start site region 46895	932 bp upstream
Tssr46896	transcription start site region 46896	1027 bp upstream
Tssr51613	transcription start site region 51613	1255 bp upstream
Tssr51614	transcription start site region 51614	1192 bp upstream
Tssr51615	transcription start site region 51615	1136 bp upstream
Tssr51616	transcription start site region 51616	1102 bp upstream
Tssr51617	transcription start site region 51617	1093 bp upstream
Tssr51618	transcription start site region 51618	596 bp downstream
Tssr51619	transcription start site region 51619	634 bp downstream
Tssr51620	transcription start site region 51620	643 bp downstream
Tssr51621	transcription start site region 51621	652 bp downstream
Tssr51622	transcription start site region 51622	690 bp downstream
Tssr51623	transcription start site region 51623	715 bp downstream
Tssr51624	transcription start site region 51624	733 bp downstream
Tssr51625	transcription start site region 51625	739 bp downstream
Tssr51626	transcription start site region 51626	749 bp downstream
Tssr51627	transcription start site region 51627	764 bp downstream
Tssr51628	transcription start site region 51628	805 bp downstream
Tssr51629	transcription start site region 51629	897 bp downstream
Tssr51630	transcription start site region 51630	991 bp downstream
Tssr51631	transcription start site region 51631	1040 bp downstream
Tssr51632	transcription start site region 51632	1334 bp downstream