rs579656827 SNP Detail

Summary

• ID
  rs579656827
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:18924404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TCTGACTTAG ACCCACCTCT
  A
  CTACTGTCAC ACCATCGCAC ACCAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	C57BL/6J	JF1/MsJ	KK/HlJ
ss922133277	MGP_WTSI_14_3545369	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	C57BL/6J	JF1/MsJ	KK/HlJ
rs579656827					SNP	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922133277	MGP_WTSI_14_3545369	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:18924404 () rs orientation: forward

Symbol	Name	Function Class
Gm2977	predicted gene 2977	within coordinates
Gm11109	predicted gene 11109	1997 bp downstream
Rr287363	regulatory region 287363	404 bp distal
Rr294602	regulatory region 294602	141 bp distal
Rr298266	regulatory region 298266	363 bp distal
Tssr124204	transcription start site region 124204	511 bp upstream