rs579658940 SNP Detail

Summary

• ID
  rs579658940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156046740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCGC CCCGCCCCGC CCCGCCCTGC
  Y
  CCGCCCCGCC TTCCAAGTGG TGGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	SM/J	SPRET/EiJ
ss917169865	MGP_WTSI_4_155962283	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CE/J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	PWK/PhJ	SM/J	SPRET/EiJ
rs579658940					SNP	T	T	T	T	T	C	C	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917169865	MGP_WTSI_4_155962283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156046740 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	35 bp upstream
Cpgi15495	CpG island 15495	21 bp proximal
Gm42365	predicted gene, 42365	461 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606619	regulatory region 606619	within coordinates
Rr606620	regulatory region 606620	830 bp proximal
Rr606621	regulatory region 606621	1138 bp proximal
Tssr40744	transcription start site region 40744	9 bp upstream
Tssr40745	transcription start site region 40745	59 bp upstream
Tssr40746	transcription start site region 40746	128 bp upstream
Tssr40747	transcription start site region 40747	258 bp upstream