rs579659407 SNP Detail

Summary

• ID
  rs579659407
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTC ACCATGGGAT GTTCTCAAAG
  T
  AAAAGGGAAG ATTCCTGGGC ATGAT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss915798464	MGP_WTSI_2_164332577	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs579659407					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss915798464	MGP_WTSI_2_164332577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174497 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	188 bp upstream
Tssr744	transcription start site region 744	752 bp upstream
Tssr745	transcription start site region 745	795 bp upstream
Tssr746	transcription start site region 746	806 bp upstream
Tssr747	transcription start site region 747	819 bp downstream
Tssr748	transcription start site region 748	840 bp upstream
Tssr749	transcription start site region 749	872 bp upstream
Tssr750	transcription start site region 750	885 bp upstream
Tssr751	transcription start site region 751	939 bp upstream
Tssr752	transcription start site region 752	1008 bp upstream
Tssr753	transcription start site region 753	1015 bp upstream
Tssr754	transcription start site region 754	1687 bp upstream
Tssr21562	transcription start site region 21562	146 bp upstream
Tssr21563	transcription start site region 21563	163 bp upstream
Tssr21564	transcription start site region 21564	182 bp upstream
Tssr21565	transcription start site region 21565	207 bp upstream
Tssr21566	transcription start site region 21566	217 bp upstream
Tssr21567	transcription start site region 21567	231 bp upstream
Tssr21568	transcription start site region 21568	241 bp upstream
Tssr21569	transcription start site region 21569	718 bp upstream
Tssr21570	transcription start site region 21570	780 bp upstream
Tssr21571	transcription start site region 21571	811 bp upstream
Tssr21572	transcription start site region 21572	828 bp upstream
Tssr21573	transcription start site region 21573	857 bp upstream
Tssr21574	transcription start site region 21574	921 bp upstream
Tssr21575	transcription start site region 21575	1699 bp upstream
Tssr21576	transcription start site region 21576	1715 bp upstream
Tssr21577	transcription start site region 21577	1734 bp upstream
Tssr27433	transcription start site region 27433	776 bp downstream
Tssr27434	transcription start site region 27434	799 bp downstream
Tssr27435	transcription start site region 27435	827 bp downstream
Tssr27436	transcription start site region 27436	846 bp downstream
Tssr27437	transcription start site region 27437	867 bp downstream
Tssr27438	transcription start site region 27438	897 bp downstream
Tssr27439	transcription start site region 27439	911 bp downstream
Tssr27440	transcription start site region 27440	921 bp downstream
Tssr27441	transcription start site region 27441	976 bp downstream
Tssr27442	transcription start site region 27442	984 bp downstream
Tssr27443	transcription start site region 27443	1047 bp downstream
Tssr27444	transcription start site region 27444	1056 bp downstream
Tssr27445	transcription start site region 27445	1672 bp downstream
Tssr27446	transcription start site region 27446	1716 bp downstream
Tssr27447	transcription start site region 27447	1811 bp downstream