rs579692088 SNP Detail

Summary

• ID
  rs579692088
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:23116652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATA TATATATATA TATATATATA
  K
  ATATATATCA CATGGATGTC ATAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss924212253	MGP_WTSI_19_23139288	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	G	G	T	T	T	T	T	G	G	G	G	G	T	G	G	T	T	T	G	T	T	T	G	G	T	G	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs579692088					SNP	T	T	T	T	G	G	T	T	T	T	T	G	G	G	G	G	T	G	G	T	T	T	G	T	T	T	G	G	T	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924212253	MGP_WTSI_19_23139288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:23116652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10683	CpG island 10683	1366 bp proximal
Gm56648	predicted gene, 56648	within coordinates
Gm59174	predicted gene, 59174	855 bp upstream
Klf9	Kruppel-like transcription factor 9	1938 bp upstream
Rr405898	regulatory region 405898	1312 bp upstream
Rr545290	regulatory region 545290	387 bp proximal
Rr545291	regulatory region 545291	866 bp proximal
Rr545292	regulatory region 545292	1816 bp proximal
Tssr155578	transcription start site region 155578	819 bp upstream
Tssr155579	transcription start site region 155579	1534 bp upstream
Tssr155580	transcription start site region 155580	1652 bp upstream
Tssr155581	transcription start site region 155581	1668 bp upstream
Tssr155582	transcription start site region 155582	1691 bp upstream
Tssr155583	transcription start site region 155583	1731 bp upstream
Tssr155584	transcription start site region 155584	1776 bp upstream
Tssr155585	transcription start site region 155585	1838 bp upstream
Tssr155586	transcription start site region 155586	1895 bp upstream
Tssr158621	transcription start site region 158621	1349 bp downstream
Tssr158622	transcription start site region 158622	1679 bp downstream