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rs579715114 SNP Detail
Summary
  • ID
    rs579715114
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    ChrX:72537555 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCCCC ATACCCTCCC CCCCCCCACT
Y
CCCTACCCAC CCATTCTCAT TTTTT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
JF1/MsJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ss924615126 MGP_WTSI_X_73493949 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10SnJ
C57BR/cdJ
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/2J
FVB/NJ
JF1/MsJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
rs579715114 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss924615126 MGP_WTSI_X_73493949 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: ChrX:72537555 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Bgn biglycan within coordinates
Rr4565 regulatory region 4565 within coordinates
Rr6090 regulatory region 6090 555 bp distal
Rr7747 regulatory region 7747 1018 bp proximal
Rr10758 regulatory region 10758 28 bp distal
Tssr5633 transcription start site region 5633 672 bp downstream
Tssr5634 transcription start site region 5634 748 bp downstream
Tssr5635 transcription start site region 5635 1103 bp downstream
Tssr161215 transcription start site region 161215 1945 bp downstream
Tssr161216 transcription start site region 161216 1927 bp downstream
Tssr161217 transcription start site region 161217 1888 bp downstream
Tssr161218 transcription start site region 161218 1875 bp downstream
Tssr161219 transcription start site region 161219 1814 bp downstream
Tssr161220 transcription start site region 161220 1211 bp downstream
Tssr161221 transcription start site region 161221 1152 bp downstream
Tssr161222 transcription start site region 161222 1137 bp downstream
Tssr161223 transcription start site region 161223 967 bp downstream
Tssr161224 transcription start site region 161224 913 bp downstream
Tssr161225 transcription start site region 161225 735 bp downstream
Tssr161226 transcription start site region 161226 684 bp downstream
Tssr161227 transcription start site region 161227 634 bp downstream
Tssr161228 transcription start site region 161228 649 bp upstream
Tssr161229 transcription start site region 161229 682 bp upstream
Tssr161230 transcription start site region 161230 706 bp upstream
Tssr161231 transcription start site region 161231 723 bp upstream
Tssr161232 transcription start site region 161232 774 bp upstream
Tssr161233 transcription start site region 161233 846 bp upstream
Tssr161234 transcription start site region 161234 866 bp upstream
Tssr161235 transcription start site region 161235 931 bp upstream
Tssr161236 transcription start site region 161236 974 bp upstream
Tssr161237 transcription start site region 161237 1028 bp upstream
Tssr161238 transcription start site region 161238 1064 bp upstream
Tssr161239 transcription start site region 161239 1113 bp upstream
Tssr161240 transcription start site region 161240 1127 bp upstream
Tssr161241 transcription start site region 161241 1163 bp upstream
Tssr161242 transcription start site region 161242 1196 bp upstream
Tssr161243 transcription start site region 161243 1360 bp upstream
Tssr161244 transcription start site region 161244 1384 bp upstream
Tssr161245 transcription start site region 161245 1479 bp upstream
Tssr161246 transcription start site region 161246 1635 bp upstream
Tssr161247 transcription start site region 161247 1658 bp upstream
Tssr161248 transcription start site region 161248 1927 bp upstream
Tssr163545 transcription start site region 163545 1886 bp upstream
Tssr163546 transcription start site region 163546 1822 bp upstream
Tssr163547 transcription start site region 163547 669 bp downstream
Tssr163548 transcription start site region 163548 775 bp downstream
Tssr163549 transcription start site region 163549 852 bp downstream
Tssr163550 transcription start site region 163550 907 bp downstream
Tssr163551 transcription start site region 163551 992 bp downstream
Tssr163552 transcription start site region 163552 1118 bp downstream
Tssr163553 transcription start site region 163553 1204 bp downstream
Tssr163554 transcription start site region 163554 1223 bp downstream
Tssr163555 transcription start site region 163555 1250 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory