rs579726493 SNP Detail

Summary

• ID
  rs579726493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCTC TCTCTCTCTC TCTCTCTCTC
  Y
  CTCCCTCCCT CCCTCCCTCC CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	ST/bJ	SWR/J
ss916424219	MGP_WTSI_3_127790266	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SM/J	ST/bJ	SWR/J
rs579726493					SNP	T	C	C	T	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916424219	MGP_WTSI_3_127790266	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583915 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	138 bp distal
Cpgi13801	CpG island 13801	372 bp proximal
Gm56817	predicted gene, 56817	9 bp upstream
Gm65225	predicted gene, 65225	127 bp downstream
Rr584859	regulatory region 584859	1952 bp distal
Rr584860	regulatory region 584860	344 bp distal
Rr584861	regulatory region 584861	447 bp distal
Rr584862	regulatory region 584862	20 bp distal
Rr584863	regulatory region 584863	within coordinates
Rr584864	regulatory region 584864	549 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	1064 bp downstream
Tssr31595	transcription start site region 31595	1052 bp downstream
Tssr31596	transcription start site region 31596	1019 bp downstream
Tssr31597	transcription start site region 31597	979 bp downstream
Tssr31598	transcription start site region 31598	956 bp downstream
Tssr31599	transcription start site region 31599	457 bp downstream
Tssr31600	transcription start site region 31600	389 bp downstream
Tssr31601	transcription start site region 31601	337 bp downstream
Tssr31602	transcription start site region 31602	283 bp downstream
Tssr31603	transcription start site region 31603	265 bp downstream
Tssr31604	transcription start site region 31604	141 bp downstream
Tssr31605	transcription start site region 31605	336 bp upstream
Tssr31606	transcription start site region 31606	534 bp upstream
Tssr31607	transcription start site region 31607	772 bp upstream
Tssr31608	transcription start site region 31608	840 bp upstream
Tssr31609	transcription start site region 31609	891 bp upstream
Tssr31610	transcription start site region 31610	1000 bp upstream
Tssr31611	transcription start site region 31611	1108 bp upstream
Tssr35598	transcription start site region 35598	508 bp upstream
Tssr35599	transcription start site region 35599	426 bp upstream
Tssr35600	transcription start site region 35600	398 bp upstream
Tssr35601	transcription start site region 35601	365 bp upstream
Tssr35602	transcription start site region 35602	48 bp upstream