rs579740148 SNP Detail

Summary

• ID
  rs579740148
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:55473487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACA CACACACACA CACACACACA
  S
  ACAGACAGAC AGACAGACAG ACAGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ
ss916783717	MGP_WTSI_4_55473487	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	I/LnJ	KK/HlJ	MA/MyJ	MOLF/EiJ
rs579740148					SNP	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916783717	MGP_WTSI_4_55473487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:55473487 () rs orientation: forward

Symbol	Name	Function Class
Gm12510	predicted gene 12510	within coordinates
Gm68870	predicted gene, 68870	547 bp downstream
Rr376520	regulatory region 376520	667 bp upstream
Rr592486	regulatory region 592486	568 bp proximal
Tssr41779	transcription start site region 41779	1892 bp downstream