rs579761220 SNP Detail

Summary

• ID
  rs579761220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA AACTGACATT CCTAATGAAG
  W
  TTTTTTTTTT TTATATATAA AATTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss921220581	MGP_WTSI_12_27337298	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579761220					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss921220581	MGP_WTSI_12_27337298	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	1449 bp proximal
Rr464224	regulatory region 464224	1146 bp distal
Rr464225	regulatory region 464225	3 bp distal
Rr464226	regulatory region 464226	496 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	1075 bp downstream
Tssr113043	transcription start site region 113043	925 bp downstream
Tssr115962	transcription start site region 115962	1713 bp upstream
Tssr115963	transcription start site region 115963	1234 bp upstream
Tssr115964	transcription start site region 115964	859 bp upstream
Tssr115965	transcription start site region 115965	810 bp upstream
Tssr115966	transcription start site region 115966	731 bp upstream
Tssr115967	transcription start site region 115967	461 bp upstream
Tssr115968	transcription start site region 115968	447 bp upstream
Tssr115969	transcription start site region 115969	366 bp upstream
Tssr115970	transcription start site region 115970	331 bp upstream
Tssr115971	transcription start site region 115971	275 bp upstream
Tssr115972	transcription start site region 115972	162 bp upstream
Tssr115973	transcription start site region 115973	189 bp downstream
Tssr115974	transcription start site region 115974	237 bp downstream
Tssr115975	transcription start site region 115975	277 bp downstream
Tssr115976	transcription start site region 115976	299 bp downstream
Tssr115977	transcription start site region 115977	313 bp downstream
Tssr115978	transcription start site region 115978	945 bp downstream
Tssr115979	transcription start site region 115979	1037 bp downstream
Tssr115980	transcription start site region 115980	1204 bp downstream
Tssr115981	transcription start site region 115981	1885 bp downstream