rs579820138 SNP Detail

Summary

• ID
  rs579820138
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133856752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAT GACACCCCAC ATCTTTGAAC
  W
  TTAAGAATTC AGCTAATGAG ATGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss917090031	MGP_WTSI_4_134129441	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579820138					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss917090031	MGP_WTSI_4_134129441	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133856752 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	417 bp downstream
Cpgi15028	CpG island 15028	321 bp distal
Gm68742	predicted gene, 68742	within coordinates
Rr601575	regulatory region 601575	162 bp distal
Rr601576	regulatory region 601576	160 bp proximal
Rr601577	regulatory region 601577	238 bp proximal
Rr601578	regulatory region 601578	386 bp proximal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	708 bp upstream
Tssr39535	transcription start site region 39535	1836 bp downstream
Tssr39536	transcription start site region 39536	1726 bp downstream
Tssr39537	transcription start site region 39537	1475 bp downstream
Tssr43866	transcription start site region 43866	1755 bp upstream
Tssr43867	transcription start site region 43867	1721 bp upstream
Tssr43868	transcription start site region 43868	1650 bp upstream
Tssr43869	transcription start site region 43869	1630 bp upstream
Tssr43870	transcription start site region 43870	1468 bp upstream
Tssr43871	transcription start site region 43871	1418 bp upstream
Tssr43872	transcription start site region 43872	1391 bp upstream
Tssr43873	transcription start site region 43873	1365 bp upstream
Tssr43874	transcription start site region 43874	1350 bp upstream
Tssr43875	transcription start site region 43875	741 bp upstream
Tssr43876	transcription start site region 43876	671 bp upstream
Tssr43877	transcription start site region 43877	163 bp downstream