rs579831097 SNP Detail

Summary

• ID
  rs579831097
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:94390439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG CGTCGTGCGC GCGCGCGCGC
  R
  CGCGCACACA CACACACACA CACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SWR/J	ZALENDE/EiJ
ss916295317	MGP_WTSI_3_94483132	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SWR/J	ZALENDE/EiJ
rs579831097					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916295317	MGP_WTSI_3_94483132	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94390439 () rs orientation: forward

Symbol	Name	Function Class
Celf3	CUGBP, Elav-like family member 3	within coordinates
Cpgi13484	CpG island 13484	812 bp proximal
D3Umi4	DNA segment, Chr 3, University of Michigan 4	1942 bp proximal
Gm65215	predicted gene, 65215	208 bp downstream
Gm65218	predicted gene, 65218	1298 bp downstream
Rr580638	regulatory region 580638	17 bp distal
Rr580639	regulatory region 580639	176 bp proximal
Rr580640	regulatory region 580640	1077 bp proximal
Rr580641	regulatory region 580641	1830 bp proximal
Tssr30454	transcription start site region 30454	1192 bp upstream
Tssr30455	transcription start site region 30455	1206 bp upstream
Tssr30456	transcription start site region 30456	1237 bp upstream
Tssr34391	transcription start site region 34391	1083 bp downstream