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rs579835451 SNP Detail
Summary
  • ID
    rs579835451
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19430012 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCTAG AATCCCCCAG TGAGGGGCTG
Y
GGGCGTGGCT CAGTGGTAGA TCACT                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss918579992 MGP_WTSI_7_19696087 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs579835451 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss918579992 MGP_WTSI_7_19696087 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19430012 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 22 bp downstream
Cpgi18507 CpG island 18507 434 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1684 bp proximal
Gm71725 predicted gene, 71725 1031 bp upstream
Rr155346 regulatory region 155346 within coordinates
Rr167194 regulatory region 167194 388 bp proximal
Tssr2112 transcription start site region 2112 364 bp upstream
Tssr2113 transcription start site region 2113 389 bp upstream
Tssr2114 transcription start site region 2114 504 bp upstream
Tssr2115 transcription start site region 2115 540 bp upstream
Tssr2116 transcription start site region 2116 615 bp upstream
Tssr2117 transcription start site region 2117 637 bp upstream
Tssr2118 transcription start site region 2118 744 bp upstream
Tssr2119 transcription start site region 2119 753 bp downstream
Tssr2120 transcription start site region 2120 816 bp upstream
Tssr2121 transcription start site region 2121 848 bp upstream
Tssr2122 transcription start site region 2122 1568 bp downstream
Tssr64880 transcription start site region 64880 181 bp upstream
Tssr64881 transcription start site region 64881 233 bp upstream
Tssr64882 transcription start site region 64882 277 bp upstream
Tssr64883 transcription start site region 64883 315 bp upstream
Tssr64884 transcription start site region 64884 342 bp upstream
Tssr64885 transcription start site region 64885 421 bp upstream
Tssr64886 transcription start site region 64886 442 bp upstream
Tssr64887 transcription start site region 64887 474 bp upstream
Tssr64888 transcription start site region 64888 693 bp upstream
Tssr64889 transcription start site region 64889 787 bp upstream
Tssr64890 transcription start site region 64890 833 bp upstream
Tssr64891 transcription start site region 64891 856 bp upstream
Tssr64892 transcription start site region 64892 889 bp upstream
Tssr64893 transcription start site region 64893 924 bp upstream
Tssr64894 transcription start site region 64894 1378 bp upstream
Tssr64895 transcription start site region 64895 1474 bp upstream
Tssr64896 transcription start site region 64896 1500 bp upstream
Tssr70973 transcription start site region 70973 205 bp downstream
Tssr70974 transcription start site region 70974 251 bp downstream
Tssr70975 transcription start site region 70975 279 bp downstream
Tssr70976 transcription start site region 70976 314 bp downstream
Tssr70977 transcription start site region 70977 362 bp downstream
Tssr70978 transcription start site region 70978 377 bp downstream
Tssr70979 transcription start site region 70979 401 bp downstream
Tssr70980 transcription start site region 70980 411 bp downstream
Tssr70981 transcription start site region 70981 432 bp downstream
Tssr70982 transcription start site region 70982 446 bp downstream
Tssr70983 transcription start site region 70983 479 bp downstream
Tssr70984 transcription start site region 70984 496 bp downstream
Tssr70985 transcription start site region 70985 561 bp downstream
Tssr70986 transcription start site region 70986 594 bp downstream
Tssr70987 transcription start site region 70987 624 bp downstream
Tssr70988 transcription start site region 70988 668 bp downstream
Tssr70989 transcription start site region 70989 707 bp downstream
Tssr70990 transcription start site region 70990 719 bp downstream
Tssr70991 transcription start site region 70991 764 bp downstream
Tssr70992 transcription start site region 70992 772 bp downstream
Tssr70993 transcription start site region 70993 781 bp downstream
Tssr70994 transcription start site region 70994 822 bp downstream
Tssr70995 transcription start site region 70995 827 bp downstream
Tssr70996 transcription start site region 70996 860 bp downstream
Tssr70997 transcription start site region 70997 894 bp downstream
Tssr70998 transcription start site region 70998 956 bp downstream
Tssr70999 transcription start site region 70999 974 bp downstream
Tssr71000 transcription start site region 71000 1417 bp downstream
Tssr71001 transcription start site region 71001 1447 bp downstream
Tssr71002 transcription start site region 71002 1507 bp downstream
Tssr71003 transcription start site region 71003 1525 bp downstream
Tssr71004 transcription start site region 71004 1553 bp downstream
Tssr71005 transcription start site region 71005 1904 bp downstream
Tssr71006 transcription start site region 71006 1937 bp downstream
Tssr71007 transcription start site region 71007 1995 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory