rs579838073 SNP Detail

Summary

• ID
  rs579838073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135504606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG GGGAGGGAAG GGGAGGGGAG
  R
  GGAGGGGAGG GGAGGGGTTC TAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
ss914993657	MGP_WTSI_1_135576868	EVA_MGPV3	EVA_MGPV3	f	SNP	G	A	A	G	A	A	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	I/LnJ	LP/J	MA/MyJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	ST/bJ	SWR/J
rs579838073					SNP	G	A	A	G	A	A	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss914993657	MGP_WTSI_1_135576868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135504606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419193	regulatory region 419193			1998 bp distal
Rr419194	regulatory region 419194			1212 bp distal
Rr419195	regulatory region 419195			977 bp proximal
Rr419196	regulatory region 419196			1973 bp proximal