rs579869400 SNP Detail

Summary

• ID
  rs579869400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:88947558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAAA GCATTGGCTT TGCAAGCCCA
  K
  GGACTCAAGT TTGATTCCCA GAACT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss919946999	MGP_WTSI_9_89065505	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NZO/HlLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs579869400					SNP	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss919946999	MGP_WTSI_9_89065505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:88947558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22121	CpG island 22121	1132 bp proximal
Gm68594	predicted gene, 68594	within coordinates
Rr684355	regulatory region 684355	710 bp proximal
Rr684356	regulatory region 684356	1211 bp proximal
Rr684357	regulatory region 684357	1319 bp proximal
Rr684358	regulatory region 684358	1484 bp proximal
Tssr86421	transcription start site region 86421	1465 bp upstream
Tssr86422	transcription start site region 86422	1542 bp upstream