rs579878190 SNP Detail

Summary

• ID
  rs579878190
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76475529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AGAGAAGAGA AGAGAAGAGA
  R
  GAGAGGAGAG GAGAGGAGAG GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SWR/J
ss924065561	MGP_WTSI_18_76342458	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BUB/BnJ	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	DBA/2J	FVB/NJ	JF1/MsJ	MA/MyJ	MOLF/EiJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SWR/J
rs579878190					SNP	A	A	G	A	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss924065561	MGP_WTSI_18_76342458	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76475529 () rs orientation: forward

Symbol	Name	Function Class
Rr347326	regulatory region 347326	1529 bp distal
Rr347327	regulatory region 347327	1272 bp proximal
Tssr151998	transcription start site region 151998	597 bp upstream