rs579880070 SNP Detail

Summary

• ID
  rs579880070
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  142
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:33597638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAC TTTCCTTTAG TTGTGGGTTT
  C
  TTGGGGGGGG GGGGGATCTG TTTTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
ss923908584	MGP_WTSI_18_33464585	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J
rs579880070					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss923908584	MGP_WTSI_18_33464585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33597638 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9808	CpG island 9808	85 bp distal
Gm10549	predicted gene 10549	within coordinates
Nrep	neuronal regeneration related protein	556 bp upstream
Rr352671	regulatory region 352671	within coordinates
Tssr152761	transcription start site region 152761	1142 bp upstream
Tssr152762	transcription start site region 152762	1112 bp upstream
Tssr152763	transcription start site region 152763	955 bp upstream
Tssr152764	transcription start site region 152764	927 bp upstream
Tssr152765	transcription start site region 152765	783 bp upstream
Tssr152766	transcription start site region 152766	729 bp upstream
Tssr152767	transcription start site region 152767	681 bp upstream
Tssr152768	transcription start site region 152768	521 bp upstream
Tssr152769	transcription start site region 152769	199 bp upstream